## Removing 838 rows with all zero counts

Counts per cell (post gene filtration)

DE Volcano Plots

The design matrix takes the form of ~tag_plate+timepoint+cell_type+PID

C7D1 Vs C1D1/C1D8

## Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

C12_D29 Vs C1D1/C1D8

CD90 High vs Low

## Warning: ggrepel: 13 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

Table of DE Results

C7D1 vs C1D1/C1D8

C12D29 vs C1D1/C1D8

CD90 High vs Low

Pathway Analyses

C7D1 vs C1D1

KEGG

## 'select()' returned 1:1 mapping between keys and columns

GO

## 'select()' returned 1:1 mapping between keys and columns

CD90 high vs low

KEGG

## 'select()' returned 1:1 mapping between keys and columns

GO

## 'select()' returned 1:1 mapping between keys and columns

UMAPs

By Timepoint

By Cell Type

By Plate

By PID

Cancer vs HSA

## Removing 2373 rows with all zero counts

Volcano Plot

## Warning: ggrepel: 135 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

Table of DE Results

KEGG

## 'select()' returned 1:1 mapping between keys and columns

GO

## 'select()' returned 1:1 mapping between keys and columns